miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Glycine soja



ABOUT THIS RECORD

ID: MNEST040640
species: Glycine soja
miRNA family: MIR1510
source: miRBase, original name: gso-MIR1510b (MI0015361)

Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTTGTTTTACCTATTCCACC

miRNA*
AGGGATAGGTAAAACAACTAC

mismatches: 2
bulges: 0

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pre-miRNA
GGATTTTATGGAAGTGGAGGGATAGGTAAAACAACTACTTCTGTAAAAGTAATTGTTATAGTTAGTTGTTGTTTTACCTATTCCACCAATTCCATCTATC
C


dot-bracket secondary structure
((((...((((((.(((.(((((((((((((((((.(((.((((((((....)).))))))..))).))))))))))))))))).))).))))))..)))
)



SIMILARITIES
miRBase gma-MIR1510b: 2e-48

PMRD gma-miR1510b: 2e-48

microPC miR1510: 2e-23
UniProt no hits

RFAM no hits

Identical with: gma-MIR1510b from miRBase (MNEST040491)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"




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